adds dockerfile for pangolin 4.3.1 and pdata 1.23.1 #777
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PR adds a dockerfile & readme for a patch release of
pangolin-data
1.23.1 which includes an important bugfix for calling BA.2.86.2, BA.2.86.3 and JQ.1. These were designated after pango-designation release 1.23, but accidentally included in the UShERlineageTree.pb
tree. So previously when running pangolin on JQ.1 genomes, there would be an error since it was not included in thealias_key.json
which is required byscorpio
I only want to announce this docker image and skip over the one that was just PR'd & deployed so that folks can avoid the bug with JQ.1 genomes
Changes from previous dockerfile:
Thank you @erinyoung & the UPHL team for the JQ.1 genome!!! Very much appreciate you sharing the genome via gisaid & ncbi!
Pull Request (PR) checklist:
docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15
)spades/3.12.0/Dockerfile
)shigatyper/2.0.1/test.sh
)spades/3.12.0/README.md
)